Hi Seán,
Enabling multi-layer transparency should do the trick.
From the menu:
Setting > Transparency > Multi-Layer
From the command line:
PyMOL> set transparency_mode, 1
Hope that helps.
Cheers,
Thomas
> On Feb 24, 2020, at 10:32 PM, Seán Downey wrote:
>
> Hi all,
>
> I am trying to r
Hi all,
I am trying to render an image of a protein structure with a transparent
surface and a slightly less transparent cartoon structure, of the same
colour, in order to show both the cartoon structure and a ligand
(non-transparent) bound within as well as the surface. Using the ray
option, the
