Hi,
I'm having an issue trying to run various plugins in pymol (apbs and
autodock). Whenever I select a button that should bring up a file browser
to choose a file (e.g. Choose Externally generated pqr in apbs) Pymol
exits with: Segmentation fault (core dumped). Same thing happens when I go
to
]
Sent: Thursday, September 24, 2009 11:26 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Pymol segmentation fault
Hi,
I'm having an issue trying to run various plugins in pymol (apbs
and autodock). Whenever I select
Does anyone have any thoughts?
Two things to try that may or may not help:
1. Check if the problem persists when running pymol in single-threaded
mode (cmd.set('max_threads',1)). libpthread in the trace might
indicate that one of the libraries is having issues with multiple threads.
2. On
*To:* pymol-users@lists.sourceforge.net
*Subject:* [PyMOL] Pymol segmentation fault
Hi,
I'm having an issue trying to run various plugins in pymol (apbs and
autodock). Whenever I select a button that should bring up a file browser
to choose a file (e.g. Choose Externally generated pqr in apbs
, October 11, 2005 5:06 AM
To: Warren DeLano
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] PyMol segmentation fault while starting
from external python program
Warren
It seems like PyMol should have time to load after import
pymol and before anything else can be done
Update:
With respect to import pymol, I think all of the reported segmentation
fault and race conditions have now been eliminated from the very latest
source code. Since everyone doesn't have CVS access, I have posted a
source tar-gz file on http://delsci.com/beta with updated instructions
on
segmentation fault while starting from
external python program
Launching PyMol form external python script will produce
segmaentation fault.
For example starting launch.py from /pymol/examples/launching
--
$ python launch.py
zsh: segmentation fault
Hi everyone,
I've recently updated to the 0.97 release of pymol and although it ran
fine to start with, it's now generating a segmentation fault. I
installed from the * pymol-0_97-bin-linux-libc6-i386.tgz*
http://prdownloads.sourceforge.net/pymol/pymol-0_97-bin-linux-libc6-i386.tgz?download
On Mon, 26 Jul 2004 10:40:47 +0100, Roger Dodd rb...@hermes.cam.ac.uk
wrote:
Hi everyone,
I've recently updated to the 0.97 release of pymol and although it ran
fine to start with, it's now generating a segmentation fault. I
installed from the * pymol-0_97-bin-linux-libc6-i386.tgz*
