Dear Spyros, Do you know about the PyMOL wiki (http://pymolwiki.org/)?
Take a look here: http://pymolwiki.org/index.php/Color for an explanation about colors. In the default representation Green: Carbon Blue: Nitrogen Red: Oxygen Yellow: sulfur For coloring eg. >color gray will color everything gray. This is done on the command-line. You can also use the gui (top right there is a multicolored square with the letter C, for color) and select many different colors. This can be done for "all" or individually for each object/pdb you load. Hope this helps! Best regards, Folmer Fredslund 2011/7/17 Spyros Charonis <s.charo...@gmail.com>: > Hello PyMOLers, > A quick question on the surface model, is there anywhere where I can learn > how molecules are color-coded. The default scheme has green, red, and bits > of yellow (I know the accessible to solvents surface is what is shown, but > I'm not sure what red, green, and yellow bits mean)? Also, is there a way I > can turn the whole thing gray (monochrome) so that I can color in parts I > want to examine with my own coloring method? > Spyros > ------------------------------------------------------------------------------ > AppSumo Presents a FREE Video for the SourceForge Community by Eric > Ries, the creator of the Lean Startup Methodology on "Lean Startup > Secrets Revealed." This video shows you how to validate your ideas, > optimize your ideas and identify your business strategy. > http://p.sf.net/sfu/appsumosfdev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ AppSumo Presents a FREE Video for the SourceForge Community by Eric Ries, the creator of the Lean Startup Methodology on "Lean Startup Secrets Revealed." This video shows you how to validate your ideas, optimize your ideas and identify your business strategy. http://p.sf.net/sfu/appsumosfdev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
