If you would like appropriately scaled images then you can set up your
viewer to the appropriate dimensions eg for a square
viewport 700,700
or rectangle
viewport 800,400
If using a square I then use
ray 1800,1800
this ray traces an image larger than your pymol window and allows you to
Hi everyone,
Each time I try to save images, Pymol writes 640x480
pixel image to the file. I wonder if there is a way to
save images (png format) other than 640X480 pixel that
is default.
Any help will be appreciated.
Thanks.
__
Yahoo!
Hi everyone,
Each time I try to save images, Pymol writes 640x480
pixel image to the file. I wonder if there is a way to
save images (png format) other than 640X480 pixel that
is default.
Any help will be appreciated.
Thanks.
Images are saved as either the size of the viewer window, or the
@lists.sourceforge.net Subject: [PyMOL] saving images Date: Mon, 13 Sep 2004 09:38:45 -0700 Hi Greg, You might need to display your sidechains as sticks rather than lines in order for them to be visible when you write out your image file. Or perhaps, if you are not already doing it, you should raytrace your scene
Hi Greg,
So when you say that sticks don't look very good I assume you mean they
are too thick? If this is the case you know that you can change the
stick thickness by changing the stick_radius value
set stick_radius, 0.1
Ciao,
Scott
On Sep 13, 2004, at 10:56 AM, Greg C wrote:
Thanks
Hello all,
I'm having a problem saving the pymol output as an image. I'm working with asingle alpha helix (~25 residues) with the residues displayed as lines, the backbone as a ribbon, and one or more of the residues as spheres. When i go to save the image, the lines are no longerpresent in the
Hi Greg,
You might need to display your sidechains as sticks rather than lines
in order for them to be visible when you write out your image file. Or
perhaps, if you are not already doing it, you should raytrace your
scene by hitting the ray button before you write out your image file.
Scott
