Hi James,
you can save multi-model PDBs with state=0:
PyMOL> save trajectory.pdb, state=0
There is also a "save_traj" function in PSICO which can write DCD format:
http://pymolwiki.org/index.php/Psico
The latter is based on the "save2traj" script by Sean Law:
http://pymolwiki.org/index.php/Save2
Dear Pymol Users!
I wounder whether it will be possible to save big ensemble of the loaded
into pymol Pdb's files as the trajectory output (like dcd format) what are
actually can be performed by vmd (e.g by means of
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/animatepdbs/).
The pro