I would also be interested if there is any documentation about the super
algorithm and the differences to align.
-Spencer
On Fri, Nov 14, 2014 at 10:25 PM, Osvaldo Martin aloctavo...@gmail.com
wrote:
Hi,
Exactly which algorithm is behind the super command? How the outliers
pairs are
Hi Spencer,
unfortunately, to our knowledge, no formal documentation for the super align
method exists. It's a sequence-independant (means: residue name independent)
sequence alignment method based on 3D coordinates of CA atoms.
The RMSD minimizing superposition with outlier rejection is
Hi Spencer -
If you need a superposition algorithm with a published reference, try
CEAlignhttp://www.pymolwiki.org/index.php/Cealign. Some references are
listed on the page for the former CEAlign
Pluginhttp://www.pymolwiki.org/index.php/Cealign_plugin#References from
before it was
Hi Spencer,
If you are interested I have implemented a (preliminary version) of a
superposition algorithm (similar to super) using Python/PyMOL.
Cheers,
Osvaldo.
On Wed, Nov 26, 2014 at 2:40 PM, Sampson, Jared jared.samp...@nyumc.org
wrote:
Hi Spencer -
If you need a superposition
Hi,
Exactly which algorithm is behind the super command? How the outliers pairs
are defined? The is some scientific paper related to super or it is really
an experimental idea?
Thanks.
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