Re: [PyMOL] The problem of save molecule to PDB after mutagenesis wizard

2015-01-27 Thread David Hall
This occurs when retain_order is set before loading a protein. You have to: unset retain_order Then load your protein again. You might say: "I didn't set retain_order". This is likely true. Some very popular pymol plugins set it when loaded, most famously the autodock plugin. -David On Tue, Ja

[PyMOL] The problem of save molecule to PDB after mutagenesis wizard

2015-01-26 Thread Biao Ma
Hi, pymol users. I want to change same residues to another one. I try to do it refer to following site, I changed TRY128 to PHE128, http://www.pymolwiki.org/index.php/Mutagenesis But when I save the modified molecular to PDB file, the sequence of residue is out of turn. Who can tell me how to f