Hi Dan,
You're missing a slash. You have:
PyMOL.exe -qc mutate.py -- digly.pdb digly A/2 ASN
where you should have
PyMOL.exe -qc mutate.py -- digly.pdb digly A/2/ ASN
When the residue is properly selected you'll see this:
Selected!
Mutagenesis: 4 rotamers loaded.
ExecutiveRMS: RMS =0.0
Dear all,
I'm trying to write a script to perform mutagenesis on a pdb
coordinate file via the command line. When I run the script, it
produces the expected output on the terminal and even creates the
desired output PDB file, but the output file is exactly identical to
the input file other than th
