Re: [PyMOL] Assign secondary structure on group

2015-03-13 Thread Thomas Holder
The latest update to SVN fixes this. Cheers, Thomas Thomas Holder wrote, On 03/06/15 15:35: Hi Matt, thanks for the bug report. If you use the command line instead, it works if you put the group name in parenthesis, which forces PyMOL to treat it as an atom selection: PyMOL dss

[PyMOL] Assign secondary structure on group

2015-03-06 Thread Matthew Baumgartner
Hi, I'm using pymol 1.7.4.0. The A assign sec. struct. command doesn't seem to work when you call it on a group. It works fine on the objects in the group individually, but it doesn't apply the command to the objects when called from a group. Thanks, Matt Baumgartner

Re: [PyMOL] Assign secondary structure on group

2015-03-06 Thread Thomas Holder
Hi Matt, thanks for the bug report. If you use the command line instead, it works if you put the group name in parenthesis, which forces PyMOL to treat it as an atom selection: PyMOL dss (nameofgroup) Cheers, Thomas On 06 Mar 2015, at 14:53, Matthew Baumgartner mp...@pitt.edu wrote: Hi,

Re: [PyMOL] assign secondary structure?

2003-12-17 Thread Robert Campbell
* Michael Bovee mbo...@uvm.edu [2003-12-16 14:27] wrote: Hmm. When I try this I get a syntax error: __ PyMOLload EcHRSade.pdb Executive: object EcHRSade created. PyMOLhide PyMOLshow cartoon PyMOLdss EcHRSade Traceback (most recent call

[PyMOL] assign secondary structure?

2003-12-11 Thread Michael Bovee
Hi, I have a 'raw' pdb file of atom coordinates only, and I'm hoping to use the dss command in pymol to get helix and strand designations that I can paste back into the header space of the pdb so that I can model fancy helices and strands and so forth to get a nice picture in pymol. Then I

RE: [PyMOL] assign secondary structure?

2003-12-11 Thread Warren L. DeLano
] On Behalf Of Michael Bovee Sent: Thursday, December 11, 2003 1:38 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] assign secondary structure? Hi, I have a 'raw' pdb file of atom coordinates only, and I'm hoping to use the dss command in pymol to get helix and strand designations