Re: [PyMOL] cut protein in half

2013-07-01 Thread Jason Vertrees
Hi Yeping, The technique will differ depending on the structure you have. Can you send me a copy and I can try to put something together for you? If it's a homodimer, usually we can just disable one unit and show the open channel. Also, see http://hollow.sourceforge.net/channel.html and http://ww

[PyMOL] cut protein in half

2013-06-28 Thread sunyeping
    Dear pymol users, I want to make a cross-section on a ion tunnel protein to cut it in half and observe the intenal characters of the tunnel. According to materials on web, I runed the following commands: hide all show surface set ray_trace_mode, 0 set two_sided_lighting, off set ray_interior_