Hi Jason,
nice. I didn't know about the pseudoatoms, very cool.
nick
On Wed, May 19, 2010 at 10:39, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Hi Nicolas,
>
> Cool idea. First the "witihin" operator works on more than just
> single atoms. So, how about something like this:
>
>
Hi Nicolas,
Cool idea. First the "witihin" operator works on more than just
single atoms. So, how about something like this:
# fetch a protein
fetch 1oky, async=0
# let's target _all_ atoms within 8 Angs of _all_ of
# residue 55, not just one atom
select target, all within 8 of i. 55
color red
Hi Michael,
thanks!
nick
On Tue, 2010-05-18 at 23:55 -0500, Michael Zimmermann wrote:
> Dear Nicolas,
>
> As for the semi-transparent sphere, there are a number of ways to do
> that. One option: You could create a new object named new_obj with an
> atom at the center point and use "alter new
Dear Nicolas,
As for the semi-transparent sphere, there are a number of ways to do that.
One option: You could create a new object named new_obj with an atom at the
center point and use "alter new_obj, vdw=radius" to make the sphere. Then
use "set sphere_transparency, 0.5, new_obj"
Alternatively
Hello,
I would like to do the following: I have a large protein loaded in
pymol. I would like to select all atoms within a radius around a point.
I know about "select within", however, this command requires the second
selection to be an atom. I would prefer if the center of the sphere is
not neces
