Re: [PyMOL] export sequence alignment

2013-04-08 Thread Thomas Holder
Hi Joel, you can save alignment objects to clustalw format with the "save" command. Creating alignment objects with cealign is supported since version 1.5.0.5. The latest 1.6alpha also fixed swapped mobile/target arguments for creating alignment objects (only matters if aligning more than 2 struct

[PyMOL] export sequence alignment

2013-04-07 Thread Joel Tyndall
Hi folks, Sorry if this has already been asked but can I export the sequence alignment from PyMOL? I am looking to use cealign to do this (on windows) and I need the structural alignment based sequence alignment. Other tools maybe? I have mustang already Cheers Joel __

[PyMOL] export sequence alignment

2013-04-07 Thread Joel Tyndall
Sorry forgot to add, I want to use multiple structures Hi folks, Sorry if this has already been asked but can I export the sequence alignment from PyMOL? I am looking to use cealign to do this (on windows) and I need the structural alignment based sequence alignment. Other tools maybe? I have