: Re: [PyMOL] isosurface stays gray after using "surface_color" command
and "rebuild"
Hi Samuel,
Thanks for the data range output, it looks fine.
I checked the version history and found a bug which was fixed in 1.7.6. Color
ramps didn't take the transformation matri
41 44 632 57 63, http://www.id.ethz.ch/
> samuel@id.ethz.ch
>
>
> Von: Thomas Holder [thomas.hol...@schrodinger.com]
> Gesendet: Mittwoch, 11. Januar 2017 17:07
> An: Fux Samuel (ID SIS)
> Cc: pymol-users@lists.sourceforge.net
> Betreff: Re: [PyMOL] isosurface stay
n: Fux Samuel (ID SIS)
Cc: pymol-users@lists.sourceforge.net
Betreff: Re: [PyMOL] isosurface stays gray after using "surface_color" command
and "rebuild"
Hi Samuel,
What's the data range of the "densf" map?
You can query the [min, max, mean, stdev] with:
print
Hi Samuel,
What's the data range of the "densf" map?
You can query the [min, max, mean, stdev] with:
print(cmd.get_volume_histogram("densf", 0))
Does the color show up with "ray"? (That is independent of OpenGL capabilities)
Thanks,
Thomas
On 11 Jan 2017, at 16:11, Fux Samuel (ID SIS) wrote:
Hi all,
I am using PyMOL 1.7.4 on a HPC cluster (with X11-forwarding). The graphics
card (ATI) of my workstation supports OpenGL 1.4.
I am trying to color an isosurface with a color ramp from a cube file. I use
the following commands:
load PhCH2-2Py2H.xyz
hide everything
show sticks
show spher