Dear all,
I was wondering what is the state of the art for this old dark art ...
are there any good servers / programs that allow to easily upload your
own sequence alignments or create a 'transparent' alignment (I want to
see the alignment first and not a total black box) and then allow you
to write out sequence conservation based either on identity or in e.g
a Dayhoff matrix on the B factor column for displaying it later in eg
Pymol?
To be clear I do not want a structural alignment, but mapping sequence
alignment of eg a family to a single structure of a family member.
Thanks in advance, Tassos
