Hi,
I've just purchased v1.6 and installed it under MacOS 10.6.8.
I have a problem with using distance from a script, as well as via the
wizard.
my pdb has 12 chains.
when I type: distance d1, molA and chain a and resi 53 and name o, molA
and chain d and resi 8 and name n
the distance is
Hi Vincent,
we introduced dynamic_measures in PyMOL 1.4, which uses the atom ID and
is not robust against duplicated IDs. So the workaround here is to
switch dynamic_measures off:
PyMOL unset dynamic_measures
Hope that helps.
Cheers,
Thomas
vincent Chaptal wrote, On 06/20/13 17:09:
Hi,
James,
I am currently having a problem with the distance command when applied to
merged objects. The real case is actually when I remove a ligand from a
binding site and merge in a new ligand. But as a simple example, I think I
can demonstrate with the following:
The problem is in the
James,
This bug is now fixed in the open-source code (commit 3974) and will
be fixed in the next beta build of Incentive PyMOL.
Cheers,
-- Jason
On Wed, Dec 14, 2011 at 6:23 PM, James Davidson j.david...@vernalis.com wrote:
Dear All,
I am currently having a problem with the distance command
Hi Jason,
This bug is now fixed in the open-source code (commit 3974)
and will be fixed in the next beta build of Incentive PyMOL.
That was quick work - thanks!
Kind regards
James
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PLEASE READ: This email is
Hi James,
I can confirm this, looks like a recently introduced bug.
Correct result with pymol-1.4.1
Wrong result with pymol-1.5.0b1
Troels is right, if you alter the IDs you can work around the bug.
alter ala2, ID=ID+100
But AFAIK only `index` is a unique atom property in PyMOL, so still I
Dear All,
I am currently having a problem with the distance command when applied
to merged objects. The real case is actually when I remove a ligand
from a binding site and merge in a new ligand. But as a simple example,
I think I can demonstrate with the following:
frag ala, ala1
frag ala,
