Re: [PyMOL] puckering of ribose

2013-11-04 Thread Thomas Holder
Hi Priyadarshan, sorry that you didn’t get a reply on this question so far. It’s a good question, not native at all. This is a perfect task for sculpting in PyMOL. You should fix the atoms which should not move, and limit the terms to bond length and angles (no torsion or VDW). The steps to

Re: [PyMOL] puckering of ribose

2013-11-04 Thread ccp4 pymol
Thank you very much Jason. I will definitely give it a try and get back if any queries. Thank you once again. Best Regards Priyan On Mon, Nov 4, 2013 at 8:07 PM, Thomas Holder spel...@users.sourceforge.net wrote: Hi Priyadarshan, sorry that you didn’t get a reply on this question so far.

[PyMOL] puckering of ribose

2013-11-01 Thread ccp4 pymol
Hi to everyone, My apologies if the question is to naive. I was wondering if there was an easier way to flip the puckering of ribose from endo to exo conformations at 2' and 3' positions in pymol. Thank you Best wishes Priyadarshan