Re: [PyMOL] pymol crashes on xyz files with about 6000 atoms (slightly more).

2013-10-22 Thread Yotam Avital
Hi Thomas. I think that I this might be an issue of display adapter driver. I'll check this first and give you an update. On Tue, Oct 22, 2013 at 2:28 PM, Thomas Holder < spel...@users.sourceforge.net> wrote: > Hi Yotam, > > you are welcome to send me your file, then I'll have a look. > > Chee

Re: [PyMOL] pymol crashes on xyz files with about 6000 atoms (slightly more).

2013-10-22 Thread Thomas Holder
Hi Yotam, you are welcome to send me your file, then I'll have a look. Cheers, Thomas On Oct 22, 2013, at 5:52 AM, Yotam Avital wrote: > Hi Thomas. > > Thanks for the quick replay. I installed the svn version of pymol with the > same result. I know that 6000 atoms isn't much for this task

Re: [PyMOL] pymol crashes on xyz files with about 6000 atoms (slightly more).

2013-10-22 Thread Yotam Avital
Hi Thomas. Thanks for the quick replay. I installed the svn version of pymol with the same result. I know that 6000 atoms isn't much for this task and this baffle me. Is there a way for me to de-bug this? Perhaps my input file is faulty. On Tue, Oct 22, 2013 at 1:32 AM, Thomas Holder < spel...@u

Re: [PyMOL] pymol crashes on xyz files with about 6000 atoms (slightly more).

2013-10-21 Thread Thomas Holder
Hi Yotam, 6000 atoms should be absolutely no problem, even with much less memory. There were few known memory leaks that have been fixed since 1.4, so could you try to compile the latest code from SVN? http://pymolwiki.org/index.php/Linux_Install Cheers, Thomas On Oct 21, 2013, at 4:58 PM,

[PyMOL] pymol crashes on xyz files with about 6000 atoms (slightly more).

2013-10-21 Thread Yotam Avital
Hi. I have python (1.4) on a xubuntu 12.04 machine (fresh install). The machine has 6GB ram and an intel i3 processor (I don't remember the exact model). On a previous install of Ubuntu (13.04) I had no trouble viewing files of that size, but now I can't. I get the "standard" EEK! pymol just run o