Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Tatyana Sysoeva
Hi David, thanks, that was the solution! I just deleted the extension py. according to the wiki: Windows On Windows, use 'pymolrc', 'pymolrc.py' or 'pymolrc.pym'. For global defaults (all users), you can place a .pymolrc file in C:\Program Files\DeLano Scientific\PyMOL (or C:\Program Files\PyMOL

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread lists
I believe your problem is that you named your file pymolrc.py instead of pymolrc This causes pymol to read it as python rather than pymol commands. Rename the file and you should be fine. -David On Aug 23, 2011, at 8:44 AM, Tatyana Sysoeva wrote: > > Hi Tsjerk, > > I am attaching the file a

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Marius Retegan
I've never tried to use pymol in a powerpoint presentation and I have no idea what disabling security is suppose to do. Did you try to call pymol with the -o argument. This supposedly disables the security of session files. http://www.pymolwiki.org/index.php/Command_Line_Options Marius GnuPG http

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Tatyana Sysoeva
the same one: Traceback (most recent call last): File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", line 338, in parse parsing.run_file(path,self.pymol_names,self.pymol_names) File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parsing.py", line 455, in run_file exec

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Marius Retegan
What error to you get this time? These all work for me set security, 0 set security, off set security=off Marius GnuPG http://db.tt/rr7Hd0Y On Tue, Aug 23, 2011 at 2:53 PM, Tatyana Sysoeva wrote: > true, my bad, but it does not work with 0,1,2 etc, as well as set security, > off or set secu

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Tatyana Sysoeva
true, my bad, but it does not work with 0,1,2 etc, as well as set security, off or set security = 0 I am sorry for the wrong file I sent. On Tue, Aug 23, 2011 at 8:51 AM, Marius Retegan wrote: > That variable (ray_trace_mode) dows not accept logical values. > http://www.pymolwiki.org/index.php/R

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Marius Retegan
That variable (ray_trace_mode) dows not accept logical values. http://www.pymolwiki.org/index.php/Ray_trace_mode#Modes GnuPG http://db.tt/rr7Hd0Y On Tue, Aug 23, 2011 at 2:44 PM, Tatyana Sysoeva wrote: > > Hi Tsjerk, > > I am attaching the file and the terminal text. > > ++

Re: [PyMOL] pymolrc file on Windows7

2011-08-23 Thread Tatyana Sysoeva
Hi Tsjerk, I am attaching the file and the terminal text. This Executable Build integrates and extends Open-Source PyMOL 1.3. Traceback (most recent call last): File "C:\Program Files (x86)\PyMOL\PyMOL/modules\pymol\parser.py", line 338, in pars

Re: [PyMOL] pymolrc file on Windows7

2011-08-22 Thread Tsjerk Wassenaar
Hi Tanya, Does it say more than "syntax error"? Can you send the whole output? (copy crom the grey screen). In addition, can you send the pymolrc file as attachment? There might be something to do with line endings; so don't paste it in the mail, but attach the actual file that fails. Cheers, Ts

[PyMOL] pymolrc file on Windows7

2011-08-22 Thread Tatyana Sysoeva
Dear all, I have quite silly question but I could not find an answer so far. I am trying to use Pymol in a Power point presentation. For that I would like to change the default setting in Pymol - set security, off I have created a file pymolrc and put it in C:/Program Files/PyMol/PyMol/. When I am