Dear all,
How can I accurately represent ferrocene in pymol, without using CONECT
lines in the pdb file ?
By accurately I mean at least including the C-C bonds; I'd rather not
have any Fe-C bonds, but if they are present I can live.
I've been trying to figure out how to do this using atom
How about.
import select_sites
sites 1a3l
set_bond stick_radius, 0.1, resi 213
extract Fe_atom, resi 213 and name Fe
Wiki
http://www.pymolwiki.org/index.php/Select_sites
http://www.pymolwiki.org/index.php/Set_bond
Best
Troels
Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
:17 a.m.
To: Edward Deira
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] representing ferrocene in pymol
How about.
import select_sites
sites 1a3l
set_bond stick_radius, 0.1, resi 213
extract Fe_atom, resi 213 and name Fe
Wiki
http://www.pymolwiki.org/index.php/Select_sites
http
