Hi Yeping -
There is a script on the PyMOL Wiki that will help with this.
http://pymolwiki.org/index.php/Average_b
Save the code in a plain text file as average_b.py in your working directory,
then run it from the PyMOL prompt:
run average_b.py
Then you can analyze any residue you like, for
Dear pymol users,
Pdb files give B factor of each atom. How can I get B factor of the individual
residues? Thanks.
Yeping Sun
Institute of Microbiology, Chinese Academy of Sciences--
November Webinars for C, C++, Fortra