t works
> for the first set but for the second one its gives error:
> PyMOL>rms_cur sel1,sel2
> ExecutiveRMS-Error: No atoms selected.
>
> Here's the result for set1:
>
> PyMOL>select sel1, native and resid 1:53+56:72 and name P and chain M
> Selector: selection &
Hi,
I am using rms_cur for calculating rmsd for two sets of structures. It
works for the first set but for the second one its gives error:
PyMOL>rms_cur sel1,sel2
ExecutiveRMS-Error: No atoms selected.
Here's the result for set1:
PyMOL>select sel1, native and resid 1:53+56:72 and
s,
> Warren
>
>
>
> From: Albert Solernou [mailto:alb...@mmb.pcb.ub.es]
> Sent: Thu 4/23/2009 9:42 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] rms_cur, rms, fit - No atoms selected
>
>
>
> I'm new at pym
suing such
commands:
alter all, segi=''
alter c321 and chain E, chain='A'
alter c321 and chain I, chain='B'
etc.
Cheers,
Warren
From: Albert Solernou [mailto:alb...@mmb.pcb.ub.es]
Sent: Thu 4/23/2009 9:42 AM
To: pymol-use
I'm new at pymol, and I'm trying to use the commands rms and rms_cur.
I have two pdb files, with two proteins in each.
First, I load the files
> load 1acb_321000.pdb, c321
> load 1acb_dock.pdb, dock
then I select the backbone of the B chain of each complex,
> select lc, /c321//b//ca+c+n+o
> sele
64-98
>Selector: selection "D" defined with 35 atoms.
>
> So far, so good.
Actually not quite so good as you think...
> PyMOL>rms_cur A, D
> ExecutiveRMS-Error: No atoms selected.
>
> Can anyone shed some light on this, please?
Yes, the prob
easy selections
A and D as:
PyMOL>sel A, 1gh2 and n. CA and i. 65-99
Selector: selection "A" defined with 35 atoms.
PyMOL>sel D, 1kao and n. CA and i. 64-98
Selector: selection "D" defined with 35 atoms.
So far, so good.
PyMOL>rms_cur A, D
Executive
