Hi Christian,
cartoon_side_chain_helper was implemented as an atom-level-setting in the
latest Incentive PyMOL version. In older versions and in the current
open-source, the setting is object-level. However, if you create a separate
object like you said, it should work with these versions too.
Hej,
I'm not sure about the side chain helper options, but you can always
selectively show displays.
You could try something like:
show_as cartoon, object
show sticks, sele and not name N+C+O
or:
show_as cartoon, object
show sticks, sele
hide sticks, name N+C+O
Either option should show the ca
Hi there,
I used the side chain helper option to create a binding site in the
protein. However I want include a glycine, which doesn't show up. Even
when I create an extra object with the glycine and an neighbouring
residue I didn't get the carbonyl oxygen atom of glycine and I don't
want to s
gham.ac.uk]
Sent: Friday, March 13, 2009 5:01 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] side chain helper
Dear all,
I'm currently using PyMol v1.2b2 and think I may have found a
little glitch. While preparing a figure with w
Dear all,
I'm currently using PyMol v1.2b2 and think I may have found a little glitch.
While preparing a figure with waters and stick representations on a cartoon
backbone with the sidechain helper switched on the sphere representation of the
waters disappear leaving only nonbonded crosses. If t
