Dear PyMol users!
I have a set of conformations extracted from the MD trajectory (on the
equal time-steps). After loading of all that pdb's into pymol (each
conformer= separate pdb file) I want to sort that structures based on the
RMSD relative to the reference conformer (e.g step0.pdb ) in the selected
range (e.g select and sort only structures with RMSD = 0.5 to the 0.pdb. So
if I have 100 conformers I want that pymol select only 5 structures with
rmsd (measured by TMalign plugin for instance) to reference equal to 0.5,
1, 1.5, 2.0, 2.5 and 3.0 Angstroms, respectively).
Does it possible to make such sorting ?
James
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