RE: [PyMOL] transformation matrix for align?

2005-05-18 Thread Warren DeLano
1:51 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] transformation matrix for align? > > > Hi all! > > I'm new to pymol and I love it! > > I'm wondering if there is a way to obtain the affine > transformation used to superimpose two struct

[PyMOL] transformation matrix for align?

2005-05-18 Thread Kristina Rogale Plazonic
Hi all! I'm new to pymol and I love it! I'm wondering if there is a way to obtain the affine transformation used to superimpose two structures with the align command? I'm a biopython user and I'd need this matrix for further processing... Thank you very much! Kristina

Re: [PyMOL] transformation matrix

2004-10-22 Thread Lieven Buts
On Friday 22 October 2004 02:07, Milton H. Werner, Ph.D. wrote: > I assume there is a way in pymol to read a DALI rotation/transformation > matrix so that two dissimilar molecules can be intelligently aligned. > Can someone tell me how it is done? I have a simple Python script that extracts the tr

[PyMOL] transformation matrix

2004-10-21 Thread Milton H. Werner, Ph.D.
Hi, I assume there is a way in pymol to read a DALI rotation/transformation matrix so that two dissimilar molecules can be intelligently aligned. Can someone tell me how it is done? Thanks, Milton -- Associate Professor and Head, Laboratory of Molecular Biophysics The Rockefeller University