[PyMOL] white background

2015-05-28 Thread Oganesyan, Vaheh
Dear PyMOL developers, The latest incentive version of PyMOL 1.7.6.0 fails to show residue numbering in the sequence in the upper part of the screen when the background has been chosen to be white (i.e., it does not change the color of the font) . Also, unlike previous versions, after choosing

Re: [PyMOL] white background

2015-05-28 Thread Thomas Holder
Hi Vaheh, I can't reproduce the font color problem. What operating system do you use and what kind of graphics card? Do you set any settings (e.g. in your pymolrc)? How do you change the background color (menu, command, setting)? I can reproduce the non-instant appearing of the sequence viewer

[PyMOL] white background is black when opaque_background is on

2014-09-16 Thread vincent Chaptal
Hi all, when I use : cmd.set('''opaque_background''','''0''',quiet=0) cmd.bg_color('white') the background is black. If I set the background back to opaque, then it turns white. Is there a way to keep the background white at all times when setting the opacity off? I'm using pymol 1.7.2. It

Re: [PyMOL] white background is black when opaque_background is off

2014-09-16 Thread vincent Chaptal
Sorry, I meant in the title, opaque_background set to off. Le 9/16/14 3:03 PM, vincent Chaptal a écrit : Hi all, when I use : cmd.set('''opaque_background''','''0''',quiet=0) cmd.bg_color('white') the background is black. If I set the background back to opaque, then it turns white. Is

Re: [PyMOL] white background is black when opaque_background is off

2014-09-16 Thread Thomas Holder
Hi Vincent, this bug was introduced in 1.7.2.0 and fixed in 1.7.2.1, please upgrade if you have the chance. Cheers, Thomas On 16 Sep 2014, at 09:10, vincent Chaptal vincent.chap...@ibcp.fr wrote: Sorry, I meant in the title, opaque_background set to off. Le 9/16/14 3:03 PM, vincent

[PyMOL] white background text color problem (was:Re: Sequence numbers in MacPyMOL 1.6.0.0 with background set to white)

2013-09-09 Thread Christoph Parthier
Hi again, A short revision on the 'background color' problem (when setting background color to 'white' the background of the alternative command text window (ESC key) remains black and text is not visible). Anyone else experiencing this problem? I (now) think it is unrelated to the sequence

Re: [PyMOL] white background text color problem (was:Re: Sequence numbers in MacPyMOL 1.6.0.0 with background set to white)

2013-09-09 Thread Thomas Holder
Hi Christoph, as I wrote yesterday (reply to Engin's first message), the sequence viewer background issue is fixed in the latest open-source code. The problem appeared in version 1.6.0.0, no earlier version should be affected. Cheers, Thomas Christoph Parthier wrote, On 09/09/13 11:19: Hi