Huiying,
PyMOL will recognize the following extensions for O maps:
.o
.omap
.brix
The following will render the entire brick at 1 sigma:
load map.o
isomesh m1, map, 1
Or if you have a pdb
load model.pdb
isomesh m1, map, 1, 100/, 8
will give you an 8 A brick around residue 100, etc.
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Huiying Li
> Sent: Wednesday, October 29, 2003 3:52 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] How to load O/BRIX map
>
>
>
> I am wondering how to load the O/BRIX maps into Pymol using
> version 0.92. Is there a default file extension, say *.dsn6,
> for O map, or need to define the map format with a keyword?
>
> Thanks for any help.
>
> --------------------------------------------------
> Huiying Li, Ph. D
> Department of Molecular Biology and Biochemistry
> Natural Sciences I, Rm 2443
> University of California at Irvine
> Irvine, CA 92697, USA
> Tel: 949-824-4322(or -1953); Fax: 949-824-3280
> email: h...@bragg.bio.uci.edu
> --------------------------------------------------
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