RE: [PyMOL] Using the Pymol Run command

2005-10-03 Thread Warren DeLano
s > Sent: Monday, October 03, 2005 10:59 AM > To: Warren DeLano > Cc: pymol-users@lists.sourceforge.net > Subject: RE: [PyMOL] Using the Pymol Run command > > Hi Warren and Gilleain - thanks for your rapid answers. For > now I am simply using 'run' on the command line a

RE: [PyMOL] Using the Pymol Run command

2005-10-03 Thread Terry Jones
Hi Warren and Gilleain - thanks for your rapid answers. For now I am simply using 'run' on the command line and it works fine. | Gilleain is right on about the run command. On Windows and linux, you | can also create .pym files that will specifically open into PyMOL. I don't understand this. |

RE: [PyMOL] Using the Pymol Run command

2005-10-03 Thread Warren DeLano
> Is there some recommended way to run a file of code? Gilleain is right on about the run command. On Windows and linux, you can also create .pym files that will specifically open into PyMOL. Another alternative is to use Python import capability. And of course, within pml files you can use blo

Re: [PyMOL] Using the Pymol Run command

2005-10-03 Thread Gilleain Torrance
Hi, You can run arbitrary python programs using the command line "run" command: run path_to_programs/python_program.py The File->Run menu seems to prefer .pml files (that is, the dialog filters out all but these). And I think that pml files are meant for line by line interpreting.