Thanks!
Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
Mobil: +45 60210234
2012/10/31 Abdullah Kahraman
> Dear Troels,
>
> Personally I don't use PyMol for this problem. Rather I use the
> application NACCESS (http://www.bioinf.manchester.ac.uk/naccess/) and
> choose a total
Dear Troels,
Personally I don't use PyMol for this problem. Rather I use the application
NACCESS (http://www.bioinf.manchester.ac.uk/naccess/) and choose a total
relative solvent accessibility of at least 5% (Miller, S. et al, 1987, J Mol
Biol 196, 641–656) to assess whether a residue is at the
Hi Troels,
I've been using
http://www.pymolwiki.org/index.php/FindSurfaceResidues
at some point. Seems to work well enough.
Otherwise you could go through the PISA server at
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
But I don't remember how exactly I would get the surface residues out
