Re: [PyMOL] Interleaved atoms when creating from two objects

2015-04-22 Thread Spencer Bliven
Thanks, it was indeed due to the autodock plugin setting retain_order. That would have taken me quite a while to debug on my own! -Spencer On Wed, Apr 22, 2015 at 6:03 PM, Matthew Baumgartner wrote: > Hi, > > I had problems with the retain order setting as well. The autodock vina > pulgin turns

Re: [PyMOL] Interleaved atoms when creating from two objects

2015-04-22 Thread Matthew Baumgartner
Hi, I had problems with the retain order setting as well. The autodock vina pulgin turns it on. Unload the plugin to fix it, or manually set it after plugins are loaded. Matt On 4/22/15 8:56 PM, Thomas Holder wrote: > Hi Spencer, > > please check your retain_order setting, it should be off (de

Re: [PyMOL] Interleaved atoms when creating from two objects

2015-04-22 Thread Thomas Holder
Hi Spencer, please check your retain_order setting, it should be off (default). If it's on, also check your pymolrc if you're setting it there. http://www.pymolwiki.org/index.php/Retain_order http://www.pymolwiki.org/index.php/Pymolrc Cheers, Thomas On 22 Apr 2015, at 20:39, Spencer Bliven