Thank you very much for your help!
David.
> To expand on this briefly, the accepted mime-type for PDB files seems to
> be chemical/x-pdb ( http://www.ch.ic.ac.uk/chemime/ )
>
> As shown in the attached screenshot from firefox, the browser decides what
> to do with a file served with a particular m
I suspect this depends on the browser you're using. If you're serving
the PDB files with an appropriate MIME-type, and the browser is
configured to open files of those types with pymol, then things should work.
That said, going through pymol through a web interface seems like it
might be more
Dear Bryan,
Curiously the escape key will switch back for you. It's been this way
forever I think.
When asking questions please specify some details on your version of
PyMOL. In my version (1.2) the figure in the main window does not
disappear when invoking the help command.
Hope this helps!
Be
> I think this is what happened. I was using the preset publication command to
Oh, you didn't tell us that! Think of the presets from
A->Action->Preset-> menus, as end-points to visualization: don't try
to change settings after you apply one of these. These are somewhat
complex scripts under the
Hi Tsjerk
Now it DOES change the color of the inside of helixes. Thank you so much.
I think this is what happened. I was using the preset publication command to
generate cartoons and then changing things. Once preset publication is
invoked the command set cartoon_highlight_color, blue does not ch
Hi Sdat5885,
Have you started a fresh session, or did you a. load a session file or
b. did some other things you didn't mention before? It may be that you
have specifically set the highlight color for your protein. The
default is not grey, but whatever color the C alpha atom has. You
might want to
Hi Jason
Sorry but it does not work. The version is PyMOL 0.99rc6, OS is XP
Professional 2002 SP3.
Thanks for the help,
Sdat5885
On Sun, Aug 15, 2010 at 6:44 PM, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Vitaly is right,
>
>"set cartoon_highlight_color, blue"
>
> will set th
Vitaly is right,
"set cartoon_highlight_color, blue"
will set the inside helical color to blue. If you're having problems,
please let us know which version of PyMOL you're using and on which OS
(including version).
Cheers,
-- Jason
On Sun, Aug 15, 2010 at 1:26 AM, s dat wrote:
> Dear All
Dear All
set cartoon_highlight_color, blue does not change anything in my figure. If
I the type set cartoon_highlight_color, -1 I get the following message:
Setting: cartoon_highlight_color set to default.
The default right now is grey. I tried to go into settings, change the
default to for ex b
Hello,
I think this is the correct syntax:
set cartoon_highlight_color, blue
Vitaly
- Original Message -
From: s dat
Date: Saturday, August 14, 2010 11:08 pm
Subject: [PyMOL] Newbie question : what command to use for changing color of
inside of helix
To: pymol-users@lists.sourceforge.
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