Jianghai,
Thats correct. To get accessible surface areas for proteins you would
have to use some outside program which can generate SASA points. Using
the rTools interface for PyMOL it should be straightforward to
integrate PyMOL with your SASA program. Check out rTools for PyMOL:
http://www.
Hi, kaushik,
Thanks for the response. Those metheds sound good first, but
when I think about it, they are not real accessible surfaces
because these surfaces still show those small reentrant shapes
between two consecutive atoms. Is there anyway to get around
this? Or can I read any surface
Hi Jianghai,
Some of these questions have been answered by Warren:
PyMOL doesn't show the solvent accessible surface, rather it shows the
solvent/protein contact surface. The solvent accessible surface area
is usually defined as the surface traced out by the center of a water
sphere, having
