Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Daniel Rigden
y, July 22, 2008 8:25 AM > To: DeLano Scientific > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] python/pymol malfunction on new Ubuntu installation > > Warren > > Thanks for the quick reply. I tried what you suggested but I get the same > error. > > Ho

Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Daniel Rigden
Warren Thanks for the quick reply. I tried what you suggested but I get the same error. How can I check how the path has been configured? It seems as if there is only one python so there shouldn't be scope for confusion; I can only find one site.py, for example, in /usr/lib/python2.5/site.py

Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Daniel Rigden
Michael Like I said, the problem is not pymol-specific; no modules can be found even when explicitly pointing PYTHONHOME to them. Pymol0.99 off the website works fine since it comes packaged with its own python modules. The one I'd like to get to work is a 1.0rc2 obtained from synaptic. It loca

Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread DeLano Scientific
Daniel, Any time you see the "import site failed" error from Python, you can infer that there is a problem with the Python interpreter being unable to access its required libraries. Messages after that aren't typically informative. This usually a path configuration issue, but I think it can al

Re: [PyMOL] python/pymol malfunction on new Ubuntu installation

2008-07-22 Thread Michael Banck
On Tue, Jul 22, 2008 at 03:38:53PM +0100, Daniel Rigden wrote: > First let me confess that my problem does not just involved pymol. > However, it is hampering my use of pymol amongst other things and there > must be many python experts who read this list. > > My problem, on a completely fresh Ubun