Re: [PyMOL] sequence conservation alignment onto structure

2010-06-04 Thread Folmer Fredslund
Dear Humayun, On 4 June 2010 13:30, humayun scherrif hum@gmail.com wrote: Dear All, Is there any way of color coding sequence conservation of a protein onto structure by using multiple sequence alignment and structure in pymol ? It might be possible to do this in PyMOL, but I would

Re: [PyMOL] sequence conservation alignment onto structure

2010-06-04 Thread humayun scherrif
Indeed, both of them (ConSurf, ALINE) worked very well. Although I found ConSurf to be exact what I asked for, but I was also looking for program like ALINE which aligns the sequences with secondary structure labelling. Thanks a lot On Fri, Jun 4, 2010 at 8:47 PM, Folmer Fredslund