Re: [PyMOL] pymol and povray

2002-10-24 Thread Robert Campbell
* Schubert, Carsten [2002-10-23 16:59] wrote: > Don't know about MACs but this works on PCs and SGIs: > - > Exporting Povray scripts from PyMol > > > The choice of the renderer is defined by the variable "ray_default_renderer". > A > value of 0 p

[PyMOL] complete surface of selection

2002-10-24 Thread Mad Max
Hi, I am trying to render the surface of only selected residues but using show surface, (resi 110,128,134,135,120,131,118,138,121,129,132,136) only shows components of the overall surface contributed by the external residues in my selection. I want to depict the entire surface of indivi

RE: [PyMOL] complete surface of selection

2002-10-24 Thread Vondelft, Frank
Hi Sri Really easy: make a new object of the residues, then do the surface: create mysel, (resi 110,128,134,135,120,131,118,138,121,129,132,136) show surface, mysel Cheers phx. -Original Message- From: Mad Max [mailto:madbush...@yahoo.com] Sent: Thursday, October 24, 2002 10:04 AM

RE: [PyMOL] complete surface of selection

2002-10-24 Thread DeLano, Warren
Frank suggested a good approach. You can also do the job within one object: show surface, (resi 110,128,134,135,120,131,118,138,121,129,132,136) flag ignore,(not (resi 110,128,134,135,120,131,118,138,121,129,132,136)) rebuild Cheers, Warren -Original Message- From: Vondelft, Frank Hi

[PyMOL] color by partial charge? (electrostatics)

2002-10-24 Thread Mark Wall
Hello, Background I want to create a surface colored by electrostatic potential in PyMOL. I can simulate this by coloring atoms by a formal charge which is either 1, 0 or -1, ... color white color blue, (fc; > 0.5) color red, (fc; < -0.5) show surface Of course this d

[PyMOL] Screen problems Mac OS X 10.2.1

2002-10-24 Thread Kersey Black
Hi, Just installed PyMOL 0.84beta -- looks great. Hoping to use it instead of Molscript on the SGI. However, the image on the screen is screwed up -- looks like it has the wrong color map, mixed in with some bad dithering. The background is dark green. When I click to move the structure, o