[PyMOL] why is PyMOL renaming my residues?

2003-09-26 Thread michael lerner
Hi, If I load up a PDB file that looks like this: HETATM 1313 OA22 NAP 164 28.315 61.969 12.250 31.54 O HETATM 1314 OA23 NAP 164 26.554 62.174 14.275 21.05 O HETATM 1314 ABCD NAP 164 28.554 64.174 16.275 11.05 O HET

[PyMOL] Re: why is PyMOL renaming my residues?

2003-09-26 Thread michael lerner
oops .. two problems with my last message: 1) i said "residue" a few times when i meant "atom" .. it should be obvious from the context of the message. 2) my email program seems to have messed up some of the formatting in the last message .. the original PDB file should look like this (assum

RE: [PyMOL] why is PyMOL renaming my residues?

2003-09-26 Thread Warren L. DeLano
Michael, PyMOL's PDB handling is an attempt to navigate a minefield of incompatible standards which exist in the conventions of various software packages. Amber in particular poses significant challenges, as its PDB files are unusual. Since version 0.90, PyMOL's behavior has chan

[PyMOL] Is it possible to specify the resolution for a GRASP output rgb file?

2003-09-26 Thread Jason Phan
Hello PyMOLers, Sorry for asking a GRASP question here, but is there a way to write out an rgb file in GRASP with a specified image resolution, e.g. 3000 x 3000? Also, what is the maximum surface resolution in GRASP? Is it 5000? Thanks, jp