[PyMOL] Bugs squashed in my scripts

2004-04-08 Thread Robert Campbell
Dear PyMOLers, It was brought to my attention yesterday that 2 of my scripts had problems with their selection routines, so I've put repaired versions up on my web site. They are: color_by_attype.py seq_select.py The problems arose if you had more than one object up with multiple chains and

Re: [PyMOL] Ray Tracing Bug in Pymol 0.93 on SuSE Linux 8.2

2004-04-08 Thread Michael Banck
On Thu, Feb 19, 2004 at 12:24:53PM +0100, Michael Banck wrote: On Thu, Feb 19, 2004 at 08:22:14AM +0100, Thomas Siegmund wrote: For me PyMol on SuSE 8.2 crashed always when raytracing a line element. That seems to be identical to Debian Bug #229080 (http://bugs.debian.org/229080) The

RE: [PyMOL] color

2004-04-08 Thread Warren DeLano
Yes, it's called spectrum...but it looks like the docs don't exist yet. PyMOLspectrum ? Usage: spectrum [ expression [, palette [, selection [, minimum [, maximum [, byres [, quiet ]]] eg: spectrum b spectrum q spectrum b, selection=my_obj spectrum b, minimum=5, maximum=60 spectrum count,

[PyMOL] Pymol and Matlab

2004-04-08 Thread Zach
Hello to all, I have created a GUI for a particular application I am developing in Matlab. I would love to be able to call Pymol and operate it from within this GUI. My GUI does certain calculations on protein based structures and I do need to visualize the results; in particular, I would be

[PyMOL] spectrum, util.rainbow

2004-04-08 Thread wgscott
Hi folks: Why is spectrum and the internal gui (which I assume invokes spectrum) so much faster than util.rainbow ? I like the util.rainbow default color scheme a bit better, but it takes forever for large complexes. Is there a simple way to get spectrum to mimic the rainbow color scheme?