Hey everyone,
I know I should be past this, but I can't seem to figure out how to do
this. I have a couple of crystal structures that contain multiple copies in
the asymmetric unit, and I would like to superimpose each copy to see what
the differences are. One way is to break the PDB file
I think that PyMOL can only align different objects, not different
selections. There may be a more elegant way, but ..
If your chains are A,B,C..H, try this from the PyMOL prompt to create
different objects:
for c in 'A B C D E F G H'.split():cmd.create(c+'_chain','chain '+c)
and this to align
Has anyone successfully built pymol 0.95 under Fedora Core 2?
Are there any particular tricks? My first attempt of just editing
Rules.make to change python2.2 to python2.3 allowed the compilation
to finish but I get the following run-time error...
Exception in thread Thread-1:
Traceback (most
Tony Giannetti wrote:
Hey everyone,
I know I should be past this, but I can't seem to figure out how to do
this. I have a couple of crystal structures that contain multiple copies in
the asymmetric unit, and I would like to superimpose each copy to see what
the differences are. One way is
I know this has come up before and I can't remember what the solution was.
PyMOL is drawing bonds between the protein I'm interested in, the ATP
analog, and the bound metal ions, presumably because the metals are close
enough to the protein and analog for bonds to be autodetected. Is there a
way
