Dear All,
I'm trying to color a protein cartoon structure from N- to C-terminal
with a green to yellow gradient. Had a browse around and couldn't quite
find the correct command. Any pointers are welcomed.
Peter
--
Dr Peter Teriete
Laboratory of Molecular Biophysics
Department of Biochemistry
Un
I am using pymol 0.97 version, I tried to contour the
electron density around the object I selected like,
load d1.pdb, d1
isomesh mesh1, map1, 1.0, (d1), carve=4.0
I can able to display the map, but i could not display
around the object.
any help might be useful
thanks
vk
=
Kabaleeswaran V
FYI for people with this problem. The EASIEST solution is the same that
people are using for ut2004 and doom3 in linux oddly enough. Just run:
LD_PRELOAD=/usr/lib/libGL.so pymol
- Charlie
I think I can help you except for one part. In short you want the
'spectrum' command. For example, you can color a chain R, based on the
b-factor with the command:
spectrum b, green_yellow, chain R
The problem is that you must color based on a numeric value that each
atom has associated. S
Will this work for what you want to do?
spectrum palette=green_yellow
Dear All,
I'm trying to color a protein cartoon structure from N- to C-terminal
with a green to yellow gradient. Had a browse around and couldn't
quite
find the correct command. Any pointers are welcomed.
Peter
"count" is the operator you're looking for:
spectrum count, green_yellow, selection=50-100/
Cheers,
Warren
--
mailto:war...@delsci.com
Warren L. DeLano, Ph.D.
Principal Scientist, DeLano Scientific LLC,
400 Oyster Point Blvd., Suite 213,
South San Francisco, CA 94080
Biz:(650)-872-0942 Tech:(65
On Monday 01 November 2004 18:05, Cathy Lawson wrote:
> Some PDB files (notably models fitted into EM density) contain only C-alpha
> coordinates.
> When read into Pymol, Ive found that the coordinates appear as a
> constellation of individual atoms, and selecting a ribbon view doesn't
> connect th
