Re: [PyMOL] sticks with different radii

2005-04-13 Thread Robert Campbell
Hi Shohei, * Shohei Koide [2005-04-12 15:39] wrote: > Hi, > > I would like to use different stick radii for the backbone and side chains > (e.g. thicker sticks for BB and thinner ones for SC). The command "set > stick_radius=X" seems to set the global stick radius, so I cannot use this > comman

Re: [PyMOL] sticks with different radii

2005-04-13 Thread Nat Echols
> You can't just do: > set stick_radius, .5, name n+ca+c+o > set stick_radius, .2, ! name n+ca+c+o > because both selections belong to the same object and the whole object > is affected by the setting change. On the other hand, you CAN do this: show lines show sticks, name n+ca+c+o set stick_radi

[PyMOL] density around ligand

2005-04-13 Thread Jianghai Zhu
Hi, all, Is there a way in Pymol to draw electron density only around my ligand? Thanks. Jianghai

[PyMOL] wildcards for selection

2005-04-13 Thread Mike Osborne
Hi i have a simple question is there a way to use wildcards to select (or in my case deselect all Hatoms in residues) for example I am using: select aro, (chain A and resi 29 and (not name hd1+hd2+he1+he2+hz)) it would be much easier to use a wildcard (I tried h*, and it did not work). Cheers Mi

[PyMOL] Creating one object from two

2005-04-13 Thread Jacob Corn
I am trying to create one composite object from two separate objects. When I issue the command create objectx, object1 or object2 objectx is created and contains most of the two objects, but is missing around 1/5-1/10 of the atoms (seemingly random stretches just gone). Similarly, if I load j