[PyMOL] definitions of secondary structure

2005-06-05 Thread Sergio E. Wong
Dear sirs; I'm wondering what are the definitions employed to determine secondary structure in pymol. Specifically, what is the variation allowed from ideal beta strand or alpha helical phi/psi angles?? Thanks -Sergio

RE: [PyMOL] definitions of secondary structure

2005-06-05 Thread Warren DeLano
Sergio, As is typical with PyMOL, the secondary structure assignment engine is ad hoc and empirically tuned to produce desirable aesthetics. Though there are some phi/psi's that are clearly helix/sheet and others that are clearly not, there are certain regions of phi/psi space were the assignment

Re: [PyMOL] keynote

2005-06-05 Thread konrad . hinsen
On 04.06.2005, at 20:23, rick young wrote: Hello everone,   I was wondering if anyone out there has any experiance with usuing Apple's Keynote to display animated pymol gif's. I've had a look in the archives and couldn't find anything.  I use QuickTime Pro to convert PyMol movies to QuickT