Re: [PyMOL] Putty

Hi Elo The formula for cmputing the putty radius is found in layer1/ Extrude.c in the source: switch(source_field) { default: /* b*/ scale = (range+(at->b - mean)/stdev)/range; if(scale<0.0F) scale = 0.0F; scale=(float)pow(scale,power)

[PyMOL] Stereo image labeling

I have a cross-eye stereo image generated by PYMOL. Is there an easy way of custom labeling the residues by using PYMOL ? Or should I use a photo editor program to label everything manually? Thanks. Hasan Demirci Department of Molecular Biology, Cellular Biology & Biochemistry Brown University

Re: [PyMOL] Stereo image labeling

Hi Hasan, Have a look at "label"... (and read the manual :)) Cheers, Tsjerk On 7/27/06, Demirci, Hasan wrote: I have a cross-eye stereo image generated by PYMOL. Is there an easy way of custom labeling the residues by using PYMOL ? Or should I use a photo editor program to label everything

[PyMOL] problem: choking on big files

Hi again, list. I need help on how to render an unconventional (non-protein) pdb file with a big number of atoms in it. Even with no display (console mode), pymol still crashes due to insufficient memory. A different hardware is out of the question and a smaller file would defeat my purpose, so

Re: [PyMOL] Putty

Hi Elo The formula for cmputing the putty radius is found in layer1/ Extrude.c in the source: switch(source_field) { default: /* b*/ scale = (range+(at->b - mean)/stdev)/range; if(scale<0.0F) scale = 0.0F; scale=(float)pow(scale,power)