[PyMOL] Call for Participation - CompLife 2006

2006-08-03 Thread Thorsten Meinl
- -- CALL FOR PARTICIPATION: CompLife '06 -- -- The 2nd Int'l Symposium on Computational Life Science -- -- -- -- FINAL PROGRAM NOW ONLINE AT www.CompLife.or

[PyMOL] set_view doesn't modify othoscopic setting

2006-08-03 Thread Shea, Adam M.
Hi all, I'm trying to use a python script with the set_view command to export views from a molecule viewer on an embeded platform to be viewed in PyMOL. I can easily add a cmd.set('orthoscopic', 1) but the online help says that set_view should be able to set the ortho flag by setting the last

[PyMOL] rejected atoms during alignment

2006-08-03 Thread Marc Bruning
hello, is there any way to find out which atoms are discarded during the refinement cycles of the "align" command? regards, marc

Re: [PyMOL] rejected atoms during alignment

2006-08-03 Thread Michael Lerner
This is not a great answer, but do you know about the object parameter for the align command? I often type something like align struct1, struct2, object=alignment and then just look at which things were included/excluded. -michael On 8/3/06, Marc Bruning wrote: hello, is there any way to f