Hi,
I am using SUPER to superimpose different structures in PyMOL. And I
noticed that when I try to superimpose a lot of different structures
onto one reference structure, the number of aligned atoms is getting
smaller and smaller as I keep using SUPER command. And eventually
structures
Jianghai,
That sounds like a bug, but it could be something specific about your
script. Could you post (or email us) an example PyMOL script which
reproduces the reported behavior?
Thanks!
Warren
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DeLano Scientific LLC
Subscriber Support Services
mailto:supp...@delsci.com
-Original Mess
Hi everyone,
I needed to know how to calculate the RMSD for 2 homologous structures
over the entire structure (For C-alpha atoms). Currently, PyMol performs
sequence alignment and then gives the RMSD values for only those regions
which are matching. But, as I mentioned before, I need RMSD values f
