Dear Paul --
On 23 Sep 2008, at 00:05, Paul Shannon wrote:
How can I turn sequence display on from a pymol script?
I guess
set seq_view, 1
would do.
HTH
Kind regards.
-- Leo --
Chavas Leonard, Ph.D. @ home
Research Associate
Mar
Thank you Tom!
Well, I can change my APBS script to remove all alternate conformations
from b to d or e!!!
Thank you again for pulling out the information.
Gilles
Thomas Stout a écrit :
To follow up on one of Gilles least important questions: I was convinced that the PDB
must contain structur
I think I found the problem with reading externally generated pqr files...
When pymol generates by itself the pqr file, it puts it in the working
directory, hence the pymol-generated.in used for apbs and the pqr file
are in the same directory. In the pymol-generated.in the file name of
the pqr
Hey all,
One of the other students in my lab is trying to run pymol as
PyMolLX11Hybrid.app in MacOSX 10.4. He installed the AutoDock plugin in
/Applications/PyMolLX11Hybrid.app/pymol/modules/pmg_tk/startup. After
installing it, when he restarts the program he receives the error: Unable to
ini
Hi Gilles --
I'm glad things are working now!
Thanks,
Nathan
On Sep 23, 2008, at 4:02 AM, Gilles Truan wrote:
I think I found the problem with reading externally generated pqr
files...
When pymol generates by itself the pqr file, it puts it in the
working directory, hence the pymol-gene
What command will select a HETATM of ATP? I am looking at 1ATP.pdb,
in which the ATP molecule appears
as shown below.
I found 'select hetatm' but found no way to be more specific, in the
spirit of
'select hetatm and name=ATP'
Thanks!
- Paul
HETATM 2937 O2 PO3 E 338 18.820 3
"select hetatm and resname atp" or "select hetatm and r. atp"
see also: "help selections"
gilleain
On Tue, Sep 23, 2008 at 7:18 PM, Paul Shannon
wrote:
> What command will select a HETATM of ATP? I am looking at 1ATP.pdb,
> in which the ATP molecule appears
> as shown below.
>
> I found 'selec
