Hi All
I have searched thru the archive and couldn't find an answer, to this. I
would like to make pymol surface(s) colored by (1) hydrophobicity and (2)
concavity/convexity.
These are easily produced in grasp, so one possibility maybe to import
some type of grasp file.
Thanks in advance for
Dear All,
I'd like to mutate an ion in pymol from a potassium to a sodium. Is
there an easy way to do this from the command line without having to
edit the pdb file of the structure?
Also, when one displays an atom (for instance a K atom) using the
spheres representation, is the radius
Dear All,
Thanks for all your suggestions on ray tracing the protein gallery.
In the end, I used several of the techniques suggested, and everything
worked out really well!
To summarize:
1. Use the grid_mode option (only available in the compiled from
source pymols)
2. Make a fake .pdb
Hi all,
I have a little problem with the visualization of a peptide conformation: as
you can see from the picture I enclose, the structure appears as if every
atom is bound to every neighbour atom. What (and how) can I set in PyMOL, to
visualize a correct structure?
Thank you very much for your