hi,
I have a pdb file with serveral frames, I hope to get the trajectory
of the center of a selected group of atoms.
I use the following commands, but return the same coord.
cmd.load(a.pdb)
coord=[]
for i in range(cmd.count_frames()):
cmd.frame(i+1)
cmd.center('id 1-24')
Hi Cun,
That's a good start. Just a couple things needs to be changed.
First, frames don't track coordinates, states do. Frames are for
movies; states are for coordinates. Next, instead of using center,
use the origin command with the state parameter specified. Here's
example code for 1NMR a
Dear Jason,
Thank you for you quick reply!
And This problem is solved!
Yours,
Zhang Cun
On Thu, Apr 29, 2010 at 9:31 PM, Jason Vertrees
jason.vertr...@schrodinger.com wrote:
Hi Cun,
That's a good start. Just a couple things needs to be changed.
First, frames don't track coordinates, states
hi all,
i am an academic using pymol and the new build places a for
evaluation only graphic on top of the rendered structure. not very
helpful for presentations, publications and the like. how do i
circumvent this without using chimera to generate my images for pubs.
thanks.
victor
On Thu, Apr 29, 2010 at 3:03 PM, victor kenyon vicken...@gmail.com wrote:
i am an academic using pymol and the new build places a for
evaluation only graphic on top of the rendered structure. not very
helpful for presentations, publications and the like. how do i
circumvent this without using
hi victor,
if you are on windows and need the latest pymol version, please take a look
at christoph's pymol builds (thanks christoph!):
http://www.lfd.uci.edu/~gohlke/pythonlibs/#pymol
best,
shiven
On Thu, Apr 29, 2010 at 6:32 PM, Nathaniel Echols
nathaniel.ech...@gmail.com wrote:
On Thu,
The quick answer is Don't use an evaluation build.
You have 3 main options:
1) become a sponsor and get builds of the latest code
http://pymol.org/funding.html
2) use the free builds that are several years old http://pymol.org/rel/099/
3) build pymol from source. There are instructions on
