[PyMOL] Problem with coloring of sticks

2010-05-28 Thread Bernhard Lechtenberg
Hello, I have the same problem as Timothy described a few days ago ('Problem with display on Intel graphics card'). I tried Pymol 1.2r1 and 0.99rc6 on Ubuntu 10.04 and had the problem with both versions. However, after ray tracing the view with the command 'ray' the color is right, until I change

Re: [PyMOL] Problem with coloring of sticks

2010-05-28 Thread Jason Vertrees
Hi Bernhard, After re-reading Timothy's original email, this very much sounds like a driver issue. Timothy reports proper functionality using the same laptop, but in Windows. Regardless, here's how I responded to Timothy's question (offline) about the coloring problems: """ Hi Tim, There are q

[PyMOL] Center-of-Mass

2010-05-28 Thread Sean Law
Hi All, I have re-written the center-of-mass script found on the Wiki (which was actually only calculating center-of-geometry). This script provides three improvements to the previous script: 1) The real center-of-mass can be calculated based on a table of atomic masses, 2) pseudoatoms are us

[PyMOL] (no subject)

2010-05-28 Thread Christian De Ford
Please stop sending me daily emails its very annoying, i would appreciate if you erase me from the list Thank you! -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourcefo

Re: [PyMOL] (no subject)

2010-05-28 Thread Thomas Juettemann
Hi Chris, the emails are only sent to you because you subscribed to the pymol-users list. If you don't want them anymore you need to unsubscribe. Click on "Show details" at the top of this email. Click then on: unsubscribe Unsubscribe from this mailing-list That will do the magic. On Fri,

Re: [PyMOL] (no subject)

2010-05-28 Thread Nat Echols
On Fri, May 28, 2010 at 10:49 AM, Thomas Juettemann wrote: > Hi Chris, > > the emails are only sent to you because you subscribed to the pymol-users > list. > If you don't want them anymore you need to unsubscribe. > > Click on "Show details" at the top of this email. Click then on: > unsubscribe

Re: [PyMOL] Problem with coloring of sticks

2010-05-28 Thread Jason Vertrees
Hi all, Before I go out an buy an ATI video card to test/debug this, can anyone else verify that this error occurs on the 965G or other desktop card? The 965GM, I think is a mobile-only card. If someone is experiencing issues on a desktop box, please provide me with the exact setup. Cheers, --