[PyMOL] Pymol 1.4.1 does not load PDBs from command line anymore
Hi, The latest PyMol (1.4.1, 32bit Linux version) does not load PDB files from the command line anymore. Does anybody have the same problem? What am I missing? Cheers, Carsten -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Pymol 1.4.1 does not load PDBs from command line anymore
Hi Alvin, thanks for the reply. Sorry, but I was not clear in describing the problem. What I meant was that loading pdb files as arguments to pymol does not seem to work anymore, i.e. 'shell_prompt # pymol x.pdb y.pdb' does not load x.pdb and y.pdb on startup. At least in 1.3 that mechanism worked. Cheers, Carsten -Original Message- From: Alvin Oga [mailto:pymol.l...@mail.linux-1u.net] Sent: Wednesday, May 11, 2011 5:49 PM To: Schubert, Carsten [PRDUS] Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Pymol 1.4.1 does not load PDBs from command line anymore hi carsten on freebsd, command line works for me ( pymol load pept.pdb ), works as in the molecule changes to the new loaded one i downloaded pymol-1.4.1 from svn and compiled the sources on freebsd- 7.4, 8.2, 6.4 --- downloading/compiling pymol-1.4.1 on debian-sid has problems tho and it doesn't execute properly ( probably because i tend to change pesky/unreasonable system default files ) i can try to download/compile/test on other linux's .. i have centos-5.4, 5.5, 5.6, fedora-core14, opensuse-11.3, 11.4, slackware-12.3 ) centos/fedora supposed to be identical to redhat which linux versions do you have ?? have fun alvin http://Linux-1U.net/BioChem The latest PyMol (1.4.1, 32bit Linux version) does not load PDB files from the command line anymore. Does anybody have the same problem? What am I missing? -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Pymol 1.4.1 does not load PDBs from command line anymore
Works for me. -David On May 11, 2011, at 5:56 PM, Schubert, Carsten [PRDUS] cschu...@its.jnj.com wrote: Hi Alvin, thanks for the reply. Sorry, but I was not clear in describing the problem. What I meant was that loading pdb files as arguments to pymol does not seem to work anymore, i.e. 'shell_prompt # pymol x.pdb y.pdb' does not load x.pdb and y.pdb on startup. At least in 1.3 that mechanism worked. Cheers, Carsten -Original Message- From: Alvin Oga [mailto:pymol.l...@mail.linux-1u.net] Sent: Wednesday, May 11, 2011 5:49 PM To: Schubert, Carsten [PRDUS] Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Pymol 1.4.1 does not load PDBs from command line anymore hi carsten on freebsd, command line works for me ( pymol load pept.pdb ), works as in the molecule changes to the new loaded one i downloaded pymol-1.4.1 from svn and compiled the sources on freebsd- 7.4, 8.2, 6.4 --- downloading/compiling pymol-1.4.1 on debian-sid has problems tho and it doesn't execute properly ( probably because i tend to change pesky/unreasonable system default files ) i can try to download/compile/test on other linux's .. i have centos-5.4, 5.5, 5.6, fedora-core14, opensuse-11.3, 11.4, slackware-12.3 ) centos/fedora supposed to be identical to redhat which linux versions do you have ?? have fun alvin http://Linux-1U.net/BioChem The latest PyMol (1.4.1, 32bit Linux version) does not load PDB files from the command line anymore. Does anybody have the same problem? What am I missing? -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Pymol 1.4.1 does not load PDBs from command line anymore
Hi Carsten, That's pretty odd. Can you please show us exactly what you're typing? Also, please provide the PyMOL and OS versions. Cheers, -- Jason On Wed, May 11, 2011 at 1:33 PM, Schubert, Carsten [PRDUS] cschu...@its.jnj.com wrote: Hi, The latest PyMol (1.4.1, 32bit Linux version) does not load PDB files from the command line anymore. Does anybody have the same problem? What am I missing? Cheers, Carsten -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Achieve unprecedented app performance and reliability What every C/C++ and Fortran developer should know. Learn how Intel has extended the reach of its next-generation tools to help boost performance applications - inlcuding clusters. http://p.sf.net/sfu/intel-dev2devmay ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
