Re: [PyMOL] Compilation of PyMOL on Mac

2011-08-12 Thread Matthias Schmidt
Hi, Any hints as to how to compile PyMOL with the VMD Molfile plugin would be highly appreciated. I tried to download the tarball in Fink, I modified setup.py and then re-built and re-installed PyMOL in Fink. Fink realises that the original tarball has been modified, and it builds the modified so

[PyMOL] how to get the coordinate of a center

2011-08-12 Thread Yamei Yu
Hi all, Is there an easy way to get the coordinate of a center? I select a domain, and center on it. Then I move an atom to the center and use iterate_state to get the coordinate. Is there an easy way to get the coordinate without manually move the atom? Thank you in advance! yamei ---

Re: [PyMOL] how to get the coordinate of a center

2011-08-12 Thread Jason Vertrees
Hi Yamei, There are already scripts to do this for you. Please see, http://www.pymolwiki.org/index.php/Center_Of_Mass http://www.pymolwiki.org/index.php/COM Cheers, On Fri, Aug 12, 2011 at 1:25 PM, Yamei Yu wrote: > Hi all, > > Is there an easy way to get the coordinate of a center? > > I sele

[PyMOL] Retrieving the contents of named selections from a saved PyMOL session

2011-08-12 Thread Ben Roberts
Hi list, I'm wondering if anyone could advise me on this question. Basically, I have three separate saved PyMOL sessions (*.pse files). Each of these has a bunch of named selections, which it took me several hours to define properly. I would like to superimpose the proteins in the different ses

Re: [PyMOL] Retrieving the contents of named selections from a saved PyMOL session

2011-08-12 Thread Jason Vertrees
Hi Ben, > Basically, I have three separate saved PyMOL sessions (*.pse files). Each of > these has a bunch of named selections, which it took me several hours to > define properly. I would like to superimpose the proteins in the different > sessions with each other, and I guess that means they