[PyMOL] How to install g_mdmat from Gromacs package into PyMOL

2012-03-07 Thread Suhaila Haji Mohd Hussin
Hey everyone! If you go to this link below: http://www.pymolwiki.org/index.php/Contact_map_visualizer Under 'Generate Contact Map', it says that I need g_mdmat first from Gromacs package. I already downloaded gromacs-4.5.5.tar.gz assuming g_mdmat should be in there and just unzipped it. The

Re: [PyMOL] How to install g_mdmat from Gromacs package into PyMOL

2012-03-07 Thread Tsjerk Wassenaar
Hi Suheila, That is really not straightforward under Windows. To run any Gromacs tools under Windows, the preferred way to install is using Cygwin. But that will pose a problem coupling to Pymol. I'd say you're out of luck, sorry. Cheers, Tsjerk On Wed, Mar 7, 2012 at 4:15 PM, Suhaila Haji Moh

Re: [PyMOL] How to install g_mdmat from Gromacs package into PyMOL

2012-03-07 Thread Ricardo O. S. Soares
Dear Suheila, GROMACS package runs at it maximum performance on a Linux environment, however you can indeed install it on a windows machine. Sadly it is not so straightforward to just unzip some Gromacs program and use it Here's the instructions: http://www.gromacs.org/Documentation/Install